Inserting a new organism
========================

Insert organism
---------------
Every data file you'll load (eg. fasta, gff, blast) must belong to an organism.
These are instructions to insert a new organism to the database **if you did NOT** load the NCBI taxonomy or if the organism you're working with is not included.

.. code-block:: bash

    python manage.py insert_organism --genus 'Organismus' --species 'ineditus'

* There are optional fields you can provide. Please take a look at the command help (--help).

Remove organism
---------------

If, by any reason, you need to remove an organism you should use the command *remove_organism*. Most data files you'll load depend on the organism record (eg. fasta, gff, blast). **If you delete an organism, every data file you loaded that depend on it will be deleted on cascade**.

.. code-block:: bash

    python manage.py remove_organism --help

* These commands require the following info: Organism.genus and Organism.species