2. Data loading

The Chado schema heavily relies on Ontologies to integrate different datasets. Therefore it must be the first to load.

Inside the extras directory, there’s a file named sample.tar.gz that might be helpful. It contains a few small FASTA and GFF files, together with a README file with examples of command lines.

• 2.1. Ontologies
• 2.2. Taxonomy
• 2.3. Organism
• 2.4. Publication
• 2.5. FASTA
• 2.6. GFF
• 2.7. Feature additional info
• 2.8. Blast
• 2.9. InterproScan
• 2.10. OrthoMCL
• 2.11. RNA-seq
• 2.12. Coexpression
• 2.13. VCF