2.10. Loading OrthoMCL results

2.10.1. Load OrthoMCL

python manage.py load_orthomcl --file groups.txt
  • Loading this file can be faster if you increase the number of threads (–cpu).
python manage.py load_orthomcl --help
–file Output result from OrthoMCL software.*
–cpu Number of threads

* required fields.

2.10.2. Remove orthology

If, by any reason, you need to remove orthology relationships, you should use the command remove_feature_annotation.

python manage.py remove_feature_annotation --help
–cvterm TERM ‘orthologous group’*
–organism ORGANISM Species name. (eg. Homo sapiens, Mus musculus)

* required fields