machado’s documentation

machado provides users with a framework to store, search and visualize biological data.

It is a framework powered by Django that contains tools to interact with a Chado.

Content

• 1. Installation
• 2. Data loading
  • 2.1. Ontologies
  • 2.2. Taxonomy
  • 2.3. Organism
  • 2.4. Publication
  • 2.5. FASTA
  • 2.6. GFF
  • 2.7. Feature additional info
  • 2.8. Blast
  • 2.9. InterproScan
  • 2.10. OrthoMCL
  • 2.11. RNA-seq
  • 2.12. Coexpression
  • 2.13. VCF
• 3. Visualization
  • 3.1. Index and search
  • 3.2. Web server
  • 3.3. JBrowse
  • 3.4. Cache
• 4. Diagrams
• 5. Models

• Search Page