machado
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  • 1. Installation
  • 2. Data loading
  • 3. Visualization
  • 4. Diagrams
  • 5. Models
machado
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machado’s documentation¶

machado provides users with a framework to store, search and visualize biological data.

It is a framework powered by Django that contains tools to interact with a Chado.

Content¶

  • 1. Installation
  • 2. Data loading
    • 2.1. Ontologies
    • 2.2. Taxonomy
    • 2.3. Organism
    • 2.4. Publication
    • 2.5. FASTA
    • 2.6. GFF
    • 2.7. Feature additional info
    • 2.8. Blast
    • 2.9. InterproScan
    • 2.10. OrthoMCL
    • 2.11. RNA-seq
    • 2.12. Coexpression
    • 2.13. VCF
  • 3. Visualization
    • 3.1. Index and search
    • 3.2. Web server
    • 3.3. JBrowse
    • 3.4. Cache
  • 4. Diagrams
  • 5. Models
  • Search Page
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